I found this post in the forum and it worked.

Hi,

I did it on a different way on my site.
The home page is at http://mishpat.net and the pages are built in http://mishpat.net/law/

LinksSQL builds a home page at http://mishpat.net/law/ but non of the pages point there. The only thing I had to change was the linked title bar.

In build.pm sub build_title_linked I changed the default to the following:
$output = qq| <a href="http://mishpat.net">$top</a> :|;

Now all the pages point to http://mishpat.net as the home page, and not to http://mishpat.net/law (so all you have to do is change the URL to yourdomain.com).
The page on http://mishpat.net was manually built and is not generated by LinksSQL build (this has other advantages such as the ability to choose which subcategories appear on the home page).

- Didi