that's correct the includes in some files are especially build for the Links-SQL engine,
you can parse this to replace for exapmle:
<%include editor.js%>

in:

<SCRIPT LANGUAGE='JavaScript1.2' SRC=editor.js'></SCRIPT>

and

<%include editor_style.css%>

to

<LINK REL="stylesheet" HREF="editor_style.css" TYPE="text/css">

(The path to the files should be correct.)